Perhaps IBIS does what you want?
http://www.ncbi.nlm.nih.gov/Structure/ibis/ibis.cgi

"IBIS ... infers/predicts interacting partners and binding sites by homology
"

-- David


On 8 August 2012 07:33, Careina Edgooms <careinaedgo...@yahoo.com> wrote:

> Dear ccp4ers
>
> I just wonder whether anybody knows if the PISA software could be
> used/modified to detect potential interfaces of interaction of different
> proteins? This would be very useful as a tool to validate protein-protein
> interactions detected by in vivo methods such as yeast 2 hybrid screens. If
> PISA is not quite there yet, does anyone know of other software that could
> do a similar thing?
>
> Best
> Careina
>

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