Dear All, I am trying to run comit in slow mode. The programs runs fine till refmac where all the 'prefix' mtz files are created. However when I give the command to assemble all the mtz files using the command (separately):
comit --prefix omit1 --mtzout omit1.mtz (OR) comit -prefix omit1 -mtzout omit1.mtz it prints the following: ############################################################### ############################################################### ############################################################### ### CCP4 6.3: comit version 0.1.0 : 14/12/11## ############################################################### User: skarthik Run date: 25/ 8/2012 Run time: 12:53:45 Please reference: Collaborative Computational Project, Number 4. 1994. "The CCP4 Suite: Programs for Protein Crystallography". Acta Cryst. D50, 760-763. as well as any specific reference in the program write-up. <!--SUMMARY_END--></FONT></B> Copyright 2011 Kevin Cowtan and University of York. All rights reserved. prefix omit1 mtzout omit1.mtz omit1_0001.mtz xyz = ( 0, 0, 0) 19.42 omit1_0002.mtz xyz = ( 0, 0, 25.32) 19.42 omit1_0003.mtz xyz = ( 0, 0, 50.65) 19.42 omit1_0004.mtz xyz = ( -10.96, 18.99, 12.19) 19.42 omit1_0005.mtz xyz = ( -10.96, 18.99, 37.52) 19.42 omit1_0006.mtz xyz = ( -16.61, 28.77, 60.03) 19.42 omit1_0007.mtz xyz = ( -21.92, 37.97, 0) 19.42 omit1_0008.mtz xyz = ( -21.92, 37.97, 25.32) 19.42 omit1_0009.mtz xyz = ( -27.57, 47.75, 47.84) 19.42 omit1_0010.mtz xyz = ( -23.25, 59.83, 12.51) 19.42 omit1_0011.mtz xyz = ( -18.77, 61.85, 101.9) 19.42 omit1_0012.mtz xyz = ( -19.1, 68.18, 35.95) 19.42 omit1_0013.mtz xyz = ( 7.972, 21.86, 60.03) 19.42 omit1_0014.mtz xyz = ( -3.488, 42.29, 43.15) 19.42 omit1_0015.mtz xyz = ( -3.488, 42.29, 76.6) 19.42 omit1_0016.mtz xyz = ( -17.77, 68.18, 61.28) 19.42 omit1_0017.mtz xyz = ( 14.62, 16.11, 12.51) 19.42 omit1_0018.mtz xyz = ( 10.79, 22.73, 94.73) 19.42 omit1_0019.mtz xyz = ( -0.166, 41.71, 12.19) 19.42 omit1_0020.mtz xyz = ( -0.332, 42, 106.9) 19.42 omit1_0021.mtz xyz = ( 14.45, 25.03, 35.95) 19.42 omit1_0022.mtz xyz = ( 26.91, 6.904, 83.79) 19.42 omit1_0023.mtz xyz = ( 36.87, 0, 120.1) 19.42 omit1_0024.mtz xyz = ( 24.41, 29.63, 75.97) 19.42 omit1_0025.mtz xyz = ( 30.56, 17.84, 56.9) 19.42 omit1_0026.mtz xyz = ( 18.43, 11.79, 113.5) 19.42 omit1_0027.mtz xyz = ( -2.657, 62.13, 21.57) 19.42 omit1_0028.mtz xyz = ( 12.12, 50.34, 90.36) 19.42 omit1_0029.mtz xyz = ( 40.03, 2.014, 99.42) 19.42 omit1_0030.mtz xyz = ( 16.94, 38.55, 51.28) 19.42 omit1_0031.mtz xyz = ( -4.982, 60.98, 84.11) 19.42 omit1_0032.mtz xyz = ( -11.79, 49.19, 59.72) 19.42 omit1_0033.mtz xyz = ( -27.07, 63.57, 84.11) 19.42 <B><FONT COLOR='#FF0000'><!--SUMMARY_BEGIN--> comit: Times: User: 15.6s System: 0.8s Elapsed: 0:16 </pre> </html> <!--SUMMARY_END--></FONT></B> ######################################################################### But the output MTZ (omit1.mtz) file was not created either in the current directory or anywhere else. However the command comit --prefix omit1 --mapout omit1.map created the omit1.map Anybody has similar problem? or I am missing something...? Thanks for any help With regards Karthik ______________________________________________________________________ सूक्ष्मजीव प्रौद्योगिकी संस्थान (वैज्ञानिक औद्योगिक अनुसंधान परिषद) Institute of Microbial Technology (A CONSTITUENT ESTABLISHMENT OF CSIR) सैक्टर 39 ए, चण्डीगढ़ / Sector 39-A, Chandigarh पिन कोड/PIN CODE :160036 दूरभाष/EPABX :0172 6665 201-202