I second Tim Gruene's suggestion of SHELXL; it's perfect for this.
However, there is a steep learning curve, so I strongly urge you to
pay close attention to the SHELXL (and SHELXPRO) manuals.

On Wed, Sep 12, 2012 at 11:44 AM, Yuri Pompeu <yuri.pom...@ufl.edu> wrote:
> Hi everyone,
> I am trying to show that a ligand underwent catalysis during a soaking 
> experiment.
> One of the things I would like to show is the geometry of the ligand, bond 
> angles/lengths, dihedrals, etc...
> One of my models has a hi-res of 1.18A and the ligand density is really clear 
> and complete.
> What is the best way to refine the ligand unrestrained and then generate 
> measurements?
> Also, the idea is to finally compare to ideal geometry. How should I generate 
> these values (any softwares in mind)?
> ANy idea is welcome.
> Thanks a lot

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