Thanks Charles - that seems to work..! Tony.
--- Dr Antony W Oliver Senior Research Fellow CR-UK DNA Repair Enzymes Group Genome Damage and Stability Centre Science Park Road University of Sussex Falmer, Brighton, BN1 9RQ email: antony.oli...@sussex.ac.uk tel (office): +44 (0)1273 678349 tel (lab): +44 (0)1273 677512 On Nov 26, 2012, at 10:19 AM, Charles Ballard wrote: > You could give > > /Applications/coot.app/Contents/Resources/script > > a go. > > Charles > > On 23 Nov 2012, at 12:20, Antony Oliver wrote: > >> Forgive what may be a very simple question… >> >> I have recently installed coot using the very nice CCP4 .dmg (0.7.0-i386) - >> which now puts coot into /Applications >> I now need to set a $PATH to coot, such that various scripts now 'know' >> where it is (i.e. Phenix and BUSTER - sorry CCP4-ers). >> >> Here I have hit a hurdle. Which binary file do I need to point a path >> variable to? >> >> From terminal I can use the command ' open -a coot ' - everything works fine >> and dandy. >> However, I cannot use ' /Applications/coot.app/Contents/MacOS/coot ' >> reliably - sometimes it works, but most of the time it crashes with the >> following errors... >> >> Nov 23 12:17:02 coot-real[80005] <Error>: kCGErrorIllegalArgument: >> CGSGetSurfaceBounds >> Nov 23 12:17:02 coot-real[80005] <Error>: kCGErrorFailure: Set a breakpoint >> @ CGErrorBreakpoint() to catch errors as they are logged. >> Nov 23 12:17:02 coot-real[80005] <Error>: kCGErrorIllegalArgument: >> CGSBindSurface: Invalid window 0x8da >> Nov 23 12:17:02 coot-real[80005] <Error>: kCGErrorIllegalArgument: >> CGSBindSurface: Invalid window 0x8da >> Nov 23 12:17:02 coot-real[80005] <Error>: kCGErrorIllegalArgument: >> CGSBindSurface: Invalid window 0x8da >> >> Am I making a school-boy error here? >> >> With many thanks, >> >> Tony. >> >> >> --- >> Dr Antony W Oliver >> Senior Research Fellow >> CR-UK DNA Repair Enzymes Group >> Genome Damage and Stability Centre >> Science Park Road >> University of Sussex >> Falmer, Brighton, BN1 9RQ >> >> email: antony.oli...@sussex.ac.uk >> tel (office): +44 (0)1273 678349 >> tel (lab): +44 (0)1273 677512 >> - > > > -- > Scanned by iCritical. > >
