Lin, consider yourself lucky if you only have one problem...;-)
regarding your question, poor reproducibility is a common problem with membrane 
protein crystallography and is most likely caused by different amounts of 
lipids copurifying with your protein. If you want to avoid it (may not be 
possible altogether) do your preps as reproducible as possible, especially 
using the same amount of detergent per cell weight, stirring at the same speed, 
for the same time etc, etc. Even then it may be hard to control. I tend to use 
this "feature" as a screening variable and always do several preps to hopefully 
get one that works well and will allow you to solve a structure.

good luck, Bert
________________________________________
From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Yibin Lin 
[yyb...@gmail.com]
Sent: Monday, December 17, 2012 11:29 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Phase separation and membrane protein crystallization

Dear all,

I am working with one membrane protein. I met one problem. From
different purification protein (following same methods, never changing
anything except "date and time"), I setup crystal plate using same
conditions, why sometime I can get crystals and sometime only phase
separation?

Thanks,
Lin

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