I got that error blurb too when I run without an image on the
commandline. Not very elegant.
Try:
labelit.png --help
On 11/01/2013 16:34, Tim Gruene wrote:
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Hi Nat!
How recent is recent? From today's 'phenix-online.org':
"New Phenix version 1.8.1 now available", but
tg@slartibartfast:~/uni/datasets/nk/xds_run3$ labelit.png_1.8.1-1168
DX-CORRECTIONS.cbf
Traceback (most recent call last):
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
line 27, in <module>
OV = overlay_plain(infile,graphics_bin)
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
line 6, in __init__
OverlayDriverClass.__init__(self,infile,graphics_bin)
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/overlay_distl.py",
line 19, in __init__
self.I = GenericImageWorker(infile,binning=graphics_bin)
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/graphics/support.py",
line 12, in __init__
images = ImageFiles(imagenames,labelit_commands)
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
line 184, in __init__
self.filenames = FileNames(arg_module,phil_params)
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
line 70, in __init__
self.interface3_parse_command()
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
line 138, in interface3_parse_command
self.interface3_FN_factory(os.path.abspath(file),error_message="File
name not accepted")
File
"/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
line 127, in interface3_FN_factory
raise Exception("Input error: "+error_message)
Exception: Input error: File name not accepted
Compared to:
tg@slartibartfast:~/uni/datasets/nk/xds_run3$ adxv -sa
DX-CORRECTIONS.cbf DX-CORRECTIONS.tiff
Adxv Version 1.9.8
Copyright (C) 1994-2011 by Andrew Arvai, Area Detector Systems Corporation
Recognized CBF format data.
Warning: Could not find diffrn_frame_data or diffrn_data_frame
tg@slartibartfast:~/uni/datasets/nk/xds_run3$ identify
DX-CORRECTIONS.tiff
DX-CORRECTIONS.tiff TIFF 768x768 768x768+0+0 8-bit PseudoClass 256c
592KB 0.000u 0:00.000
Cheers,
Tim
On 01/10/2013 09:59 PM, Frank von Delft wrote:
Brilliant - thanks Nat!! Easy to work around that feature.
And thanks Nick!!
-------- Original Message -------- Subject: Re: [ccp4bb]
Convert cbf to png/tiff? Date: Thu, 10 Jan 2013 12:47:21 -0800
From: Nat Echols <nathaniel.ech...@gmail.com> To: Frank von
Delft <frank.vonde...@sgc.ox.ac.uk>
Using any recent Phenix distribution:
labelit.png file_name
For reasons unknown to me, the output is named "plain.png" - I
will bug Nick about this.
On Thu, Jan 10, 2013 at 12:36 PM, Frank von Delft
<frank.vonde...@sgc.ox.ac.uk> wrote:
Hello all - anybody know an easy way to convert CBF images
(Pilatus) into something lossless like tiff or png?
Ideally *easy* as in r e a l l y e a s y and not requiring
extensive installation of dependencies and stuff. Because then I
might as well write my own stuff using cbflib and PIL in python.
Thanks! phx
- --
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
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