Dear Qixu, here's an excerpt from the pdbset manual:
TRANSFORM [INVERT] [FRACTIONAL] r11 r12 r13 r21 r22 r23 r31 r32 r33 tx ty tz I'm not sure what you mean by "covert from the "pdb file format" to the "pdbset format"". Please elaborate on this. Jon 2013/2/25 Qixu Cai <caiq...@gmail.com>: > Dear all, > > The matrix formats in different program always confuse me. > > The matrix format of the "REMARK 290 SMTRY" section of pdb file is: > > r11 r12 r13 tx > r21 r22 r23 ty > r31 r32 r33 tz > > What's the matrix format accepted by the "transform file" keywords of the > pdbset program? > is it "r11 r12 r13 r21 r22 r23 r31 r32 r33 tx ty tz"? > And how to covert from the "pdb file format" to the "pdbset format"? > > What's the matrix format of "apply NCS operators" in phenix GUI? > > Thanks a lot! > > Qixu Cai -- Jon Agirre, PhD Unit of Biophysics (CSIC-UPV/EHU) http://sourceforge.net/projects/projectrecon/ +34656756888
