Hi Bärbel I was using a software named Argus lab and it was fine with me , usually i use to see the total free energy of the complex structure together with the bonds with the protein amino acids Greetings Nancy
Sent from my iPhone > On 8 Mar 2014, at 10:27 pm, "Bärbel Blaum" <baerbel.bl...@uni-tuebingen.de> > wrote: > > Hi Careina, > > have a look at HADDOCK > > http://www.nmr.chem.uu.nl/haddock/ > > the group which developped it (Alexandre Bonvin's group in Utrecht) is > associated with NMR rather than crystallography but HADDOCK can make use of > all kinds of experimentally restraints, including those derived from > mutagenesis etc. The publication list on the HADDOCK homepage is no longer up > to date, but I am sure the program continues to be developped and is thus > probably up to date. > > Bärbel > > > > Zitat von Careina Edgooms <careinaedgo...@yahoo.com>: > >> Can anyone recommend a good docking program to look at protein-DNA >> interactions? > > > > -- > Bärbel Blaum, Ph.D. > Interfakultäres Institut für Biochemie (IFIB) > Hoppe-Seyler-Strasse 4 > D-72076 Tübingen > Germany > +49 70 71 29 73 375
