Hi,
It's pdb2pqr problem (unknown residue). I guess you ran pdb2pqr prior to
running APBS, if not, you should. So, you should submit your question to either
the APBS or pdb2pqr BB's. They are very helpful people.
Cheers,
Boaz
Boaz Shaanan, Ph.D.
Dept. of Life Sciences
Ben-Gurion University of the Negev
Beer-Sheva 84105
Israel
E-mail: bshaa...@bgu.ac.il
Phone: 972-8-647-2220 Skype: boaz.shaanan
Fax: 972-8-647-2992 or 972-8-646-1710
________________________________________
From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Xiaoming Ren
[xiaomingre...@gmail.com]
Sent: Thursday, April 24, 2014 10:32 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] How to create electrostatic surface of modified DNA by APBS?
Dear all:
I'm having a problem create the electrostatic surface for a DNA chain
containing several modified nucleotides. APBS could not identify those residues
and reported them as unassigned.
What should I do to solve this problem?
Thanks a lot and best,
Xiaoming
