Dear Airlie and Randy
Thank you! I have seen this error for quite some time and get it around by
using ccp4-6.3 for Phaser. Will try to be the first to report next time :-)
All the best
Jie
----- Original Message -----
From: "Airlie McCoy" <ajm...@cam.ac.uk>
To: "jie liu" <jl1...@njms.rutgers.edu>
Cc: <CCP4BB@JISCMAIL.AC.UK>
Sent: Tuesday, May 20, 2014 12:08 PM
Subject: Re: [ccp4bb] odd phaser failure
Dear Eleanor and Jie,
I replied to Eleanor off-list to say that I can credit Isabel Uson with
being the first to report this bug. The bug has been corrected for the
recent phenix release. The phenix and ccp4 releases of phaser will be
synchronised with the next ccp4 update, which is imminent.
Some ccp4bb-ers may not know that we have a reward for the first person to
report any given bug. But you only get to find out what it is if you
report a bug and also promise not to tell anyone what it is :-)
Airlie
On May 20 2014, jie liu wrote:
Dear Eleanor
I've been getting this error for a while. Switching back to ccp4-6.3
would solve the problem. I guess it's a bug of version 6.4.
Best
Jie
----- Original Message -----
From: Eleanor Dodson To: CCP4BB@JISCMAIL.AC.UK Sent: Tuesday, May 20,
2014 5:26 AM
Subject: [ccp4bb] odd phaser failure
I should be sending thids to the phaser team I guess, but maybe there is
an easy fix..
This is the end of the log file..
Sg I222 or I212121
Scoring 500 randomly sampled orientations and translations
Spreading calculation onto 2 threads.
Generating Statistics for TF SET #1 of 2
0% 100%
|===============================================================|
DONE
Mean Score (Sigma): -18.84 (17.72)
SET #1 of 2 TRIAL #1 of 245
---------------------------
Search Euler = 99.1 82.9 249.8, Ensemble = ensemble1
Doing Fast Translation Function FFT...
Done
Helix is perpendicular to two-fold: point exclusions applied
<B><FONT COLOR="#FF8800">
$TEXT:Warning: $$ Baubles Markup $$
-------------------------------------------------------------------------------------
UNHANDLED ERROR: cctbx Error: site_symmetry: min_distance_sym_equiv too
large.
-------------------------------------------------------------------------------------
$$
--------------------
EXIT STATUS: FAILURE
--------------------
CPU Time: 0 days 0 hrs 0 mins 28.27 secs ( 28.27 secs)
Finished: Mon May 19 11:44:52 2014
</pre>
