Mentioned recently but worth mentioning again?
I have used Chimera rmsd from its own command line (find the command line under
the 'favorites' tab) - it is scriptable.
https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/rmsd.html
Must have equal number of atoms matched - use selection to make that true - for
example restricting to Calpha atoms.
Cheers - Martyn
Cambridge
----Original message----
>From : c.z...@yale.edu
Date : 15/10/2014 - 21:05 (GMTDT)
To : CCP4BB@JISCMAIL.AC.UK
Subject : [ccp4bb] Command line tool for RMSD calculation
Dear all,
I am just wondering whether there is a simple command line tool for RMSD
calculation between two aligned structures? I just cannot find a good answer
online, and ccp4bb can always impress me.
Thank you so much in advance,
Chen
