Hi Renato,

have a look at the first example:
http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/Xscale
A minimal input file to combine two datasets into one file is:

OUTPUT_FILE=fae-native.ahkl
INPUT_FILE= ../fae-native/xds_1/XDS_ASCII.HKL
INPUT_FILE= ../fae-native/xds_2/XDS_ASCII.HKL


Jürgen

......................
Jürgen Bosch
Johns Hopkins University
Bloomberg School of Public Health
Department of Biochemistry & Molecular Biology
Johns Hopkins Malaria Research Institute
615 North Wolfe Street, W8708
Baltimore, MD 21205
Office: +1-410-614-4742<tel:%2B1-410-614-4742>
Lab:      +1-410-614-4894<tel:%2B1-410-614-4894>
Fax:      +1-410-955-2926<tel:%2B1-410-955-2926>
http://lupo.jhsph.edu

On Dec 10, 2014, at 3:38 PM, Renato Weisse 
<rwei...@strubio.uni-kiel.de<mailto:rwei...@strubio.uni-kiel.de>> wrote:

Hi CCP4BBers,

I would like to ask a question about how to use AIMLESS correctly with
scaled data from XDS. I collected two data sets of the same crystal, both
of which scaled individually with CORRECT from XDS. Merging of reflexes
should be done with AIMLESS. Also to obtain a more comprehensive data
statistic.
So I fed both data sets into AIMLESS with the option ONLYMERGE. But I
think that both data sets were not scaled to each other (which indeed is
no surprise with key ONLYMERGE).
So, my question is the following: what is the right order to scale and
merge multiple datasets with XDS/AIMLESS.
The output from XSCALE is a file with suffix .ahkl. Is it the same format
like .hkl and does it fit into AIMLESS?

I really appreciate your valuable sugestions.

Kind regards,
Renato

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