Dear All,
 
When we by Coot open the PDB fle and the mtz file from the same refinement, the 
protein backbone (and the sidechains) and the electron density always fit 
automatically. Will you please tell me the mechanism of the Coot how the PDB 
file automatically fit the  mtz file in its graphical window?
 
Suppose I have a PDB file and a mtz file (PDB file from protein A, mtz file 
from protein B, which is a  homology protein of protein A) which are not from 
the same refinment (thus not fit automatically in Coot), will you please tell 
me what modification I should make on the files in order to have the Coot to 
fit the protein bakbone (and the sidechains) and the electron density?
 
I am looking forward to getting your reply.
 
Smith

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