Sorry for the long delay in response.
I have just uploaded the latest fix to the ever-changing file naming
conventions of phenix.refine that I hope will be robust in the future.
You can get the latest version of the END/RAPID script from here:
http://bl831.als.lbl.gov/END/RAPID/end.rapid/Documentation/documentation.htm
I'm still working on a "REFMAC version", but most of the problems lie in
how to define a user interface that is transparent to all the different
ways people like to run REFMAC (ccp4i, scripts, coot, etc.).
Ostensibly, however, it shouldn't be hard to generate your own
"kicked.mtz" data files using my kick_data.com scripts, run the
refinements however you like, and then generate the RAPID map yourself
using the map_rmsd.com script that ships with the END/RAPID package.
HTH!
-James Holton
MAD Scientist
On 2/5/2015 1:03 AM, Isabel Garcia-Saez wrote:
Dear all,
I do apologize for the slightly off-topic subject but, how could
you calculate ccp4 absolute-scale and noise maps in ccp4?. Basically I
need e/A3 and noise maps to discard that some maps contoured at
certain sigmas are not just noise. I do know END/RAPID, but I have
some problems trying to run RAPID (I am hoping that they would be
included sometime in Phenix).
Thanks a lot,
Isabel
Isabel Garcia-SaezPhD
Institut de Biologie Structurale
Viral Infection and Cancer Group (VIC)-Cell Division Team
71, Avenue des Martyrs
CS 10090
38044 Grenoble Cedex 9
France
Tel.: 00 33 (0) 457 42 86 15
e-mail: isabel.gar...@ibs.fr <mailto:isabel.gar...@ibs.fr>
FAX: 00 33 (0) 476 50 18 90
http://www.ibs.fr