Dear Mintu, one possible option is the webserver DynDom<http://fizz.cmp.uea.ac.uk/dyndom/>.
Kind regards, Matic On 21. 04. 2015 09:39, Mintu Chandra wrote: Dear All, I am working with a protein containing tandem domains, connected with 3-4 residue linker. I want to calculate the relative motion/orientation of one domain with respect to the hinge region as well as with respect to the other domain. Both the domains have very less seq. identity (<20%). Please suggest some web server to calculate the same. Thanks, Mintu
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