Dear Mishba, Just check density vs model by simply open 'Coot',
Go to: 'File' -> 'Fetch PDB & Map using EDS' Type the pdb entry into the field - enjoy the densities. Best and god save the EDS, Gert ----------------------------------------------------- LOEWE Center for Synthetic Microbiology AG Bange - Analysis of Metabolic Networks Dr. Gert Bange Hans-Meerwein-Strasse, C7 35043 Marburg, Germany office: +49-6421-28-23361 fax: +49-6421-28-24430 web: www.synmikro.com/bange ----------------------------------------------------- LOEWE Center for Synthetic Microbiology AG Bange - Analysis of Metabolic Networks Dr. Gert Bange Hans-Meerwein-Strasse, C7 35043 Marburg, Germany office: +49-6421-28-23361 fax: +49-6421-28-24430 web: www.synmikro.com/bange Am 23.04.2015 um 18:03 schrieb Misbah ud Din Ahmad <misba.ah...@gmail.com>: > Dear crystallographers, > > The PDB entry > http://www.rcsb.org/pdb/explore.do?structureId=3BDN > has 16.5% Ramachandran outliers. When I opened this PDB file in coot and > checked for Ramachandran outliers, the results are: > In preffered region: 58.04% > In allowed regions: 19.78% > Outliers: 22.17% !!!!!!!!! > > With an R-free of 37.4% at 3.9 A resolution, could you please tell me how > reliable this structure of Lambda repressor bound to DNA is? > > > Thanks > Misbha > > > > > > >
