Dear J. Vitali, there are tools that have been mentioned by others, that assist with the assignment. The final decision depends on you as researcher. You should visually check the hydrogen bonding whether the boundaries are consistent with the automated assignment.
People often seem to think that secondary structure is program driven, but it's your structure that provides that data, and the researcher to make the final decision. Kind regards, Tim On Sunday 29 January 2017 11:41:49 AM chemocev marker wrote: > Hi > Is there any tool that can assign secondary structure to the PDB file. The > problem is if I used different modelling tools, there are regions in the > protein which does not remain consistent and looks different in different > application. > > best > > J. Vitali -- -- Paul Scherrer Institut Dr. Tim Gruene - persoenlich - Principal Investigator Biology and Chemistry OFLC/102 CH-5232 Villigen PSI Phone: +41 (0)56 310 5297 GPG Key ID = A46BEE1A
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