Hi Fellows,
upon updating a deposition of a glycosylated model, I see no longer the option in the ligand page to override the as incorrect flagged monomer assignments BMA NAG FUC etc. for glycan components. Instead, a mandatory mismatch correction is demanded. The suggestion of alternate identifiers, which was present before is also missing, together with the override option). The validation still works fine. Is this a new 'feature' or am I ignorant of a new policy? In principle I agree that using different monomer names for free monomer vs bound ones could be useful - a residue is not a free amino acid, and data miners have no easy means to distinguish such. The same argument can be made for sugars as bona fide ligands vs component of a glycan. Best, BR ------------------------------------------------------ Bernhard Rupp CVMO <http://www.hofkristallamt.org/> http://www.hofkristallamt.org/ <mailto:b...@hofkristallamt.org> b...@hofkristallamt.org +1 925 209 7429 +43 676 571 0536 ------------------------------------------------------ Many plausible ideas vanish at the presence of thought ------------------------------------------------------
