Hi everyone. I´m trying to make a covalent bond between a cystein residue of a protein and its ligand, but always that I do the refinement by Phenix, the ligand is placed outside of its electronic density. I edited the PDB file like this: LINK SG CYS A 215 C02 LIG C 1 , but this is not working. Someone has some idea to address this problem? Thanks, Gerardo
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