Hi everyone. I´m trying to make a covalent bond between a cystein residue of a 
protein and its ligand, but always that I do the refinement by Phenix, the 
ligand is placed outside of its electronic density. I edited the PDB file like 
this: LINK         SG  CYS A 215                 C02 LIG C   1 , but this is 
not working.  Someone has some idea to address this problem?
Thanks,
Gerardo

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