Dear Pavel,

By coincidence today I was looking at a soak-dataset and got totally
confused with FEM (map) and Polder now.

I am working on a dataset that processed it at 2.7A (in summer with
XDS) and there was weak density for (OCA-Octanoic acid) when looked
with FEM. This week, I retried it with DIALS and got about 2.6A (for
CC_half 0.5).  I ran FEM, and there was*no* density at all at OCA.
After seeing this CCP4 answer, I ran Polder maps and it shows clear
density for OCA. Now I am really confused why and what should I infer?
Polder run also states "The polder map is likely to show the ligand."
CC(1,2): 0.5639
CC(1,3): 0.8722
CC(2,3): 0.6193


https://imagebin.ca/v/4NbuaSRUbc5t
FEM in violet and Polder in Green

Any guidance appreciated.
Markus

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