Probably the easiest would be blasting sequences all by all and extracting peaks above certain height with a filter of some sorts. Not entirely trivial.
I can add to your list, although not all of these proteins are in the PDB - some are from my own collection :) Lysozyme (s) several are used Artificial helix bundles GS SUMO Ubq NusA Fc and other mAb domains Nanobodies (as fusions) Cyt b562 Rubredoxin Flavodoxin VLR Barnase MHC proteins Bostjan Kobe wrote a paper in 2015 which you probably saw already. Artem On Tue, May 5, 2020, 2:45 PM Murpholino Peligro <murpholi...@gmail.com> wrote: > I was wondering how many proteins that help to crystallize the protein of > interest are out there... > > and how effective is the phase extension method (i.e. use MR to get the > structure of the fusion protein into its density and the density of the > protein of interest...) > > Is there a way to get this data from the PDB? > > Here is my list so far: > - MBP > - GFP > - TRX > - Lysozyme > - GST > > Thanks > > > > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
