Dear Clemens, If the working model and reference model are exactly identical, you may try to use the same file in both the working and reference model to see if it works. I don't see anything strange in the pdb lines you attached. I'm happy to have a closer look if you are willing to share (off-list) the pdb files and the full log (no data required).
FYI, there is a Phenix specific bulletin board: http://www.phenix-online.org/mailman/listinfo/phenixbb Best regards, Oleg Sobolev. On Tue, Jun 23, 2020 at 12:18 AM Clemens Grimm < clemens.gr...@biozentrum.uni-wuerzburg.de> wrote: > Dear All, > > I am not getting any reference model matches in Phenix: > > -------------------------------------------------------- > Reference Model Matching Summary: > > reference file: reference.pdb > > Model: Reference: > > Total # of matched residue pairs: 0 > Total # of reference model restraints: 0 > -------------------------------------------------------- > > working model and reference are exactly identical. I suspect that this > has to do with some specificities of the PDB files (below). Has > anybody else encountered such a problem? > > Thanks, > Clemens > > > > ---- > > ATOM 1 N ASP I 2 265.380 222.283 314.077 1.00121.12 > N > ATOM 2 CA ASP I 2 266.526 221.945 313.241 1.00121.12 > C > ATOM 3 C ASP I 2 266.172 222.082 311.764 1.00121.12 > C > ATOM 4 O ASP I 2 266.687 222.959 311.071 1.00121.12 > O > ATOM 5 CB ASP I 2 267.014 220.523 313.548 1.00121.12 > C > ATOM 6 CG ASP I 2 268.389 220.226 312.962 1.00121.12 > C > ATOM 7 OD1 ASP I 2 268.514 220.091 311.725 1.00121.12 > O > ATOM 8 OD2 ASP I 2 269.356 220.128 313.748 1.00121.12 > O > ATOM 9 N SER I 3 265.292 221.202 311.291 1.00116.78 > N > ATOM 10 CA SER I 3 264.929 221.164 309.884 1.00116.78 > C > ATOM 11 C SER I 3 264.010 222.332 309.531 1.00116.78 > C > ATOM 12 O SER I 3 263.497 223.041 310.397 1.00116.78 > O > ATOM 13 CB SER I 3 264.250 219.839 309.548 1.00116.78 > C > ATOM 14 OG SER I 3 265.045 218.745 309.967 1.00116.78 > O > > > .... > > > ATOM 6438 N ASN I 795 197.555 302.028 252.461 1.00 91.20 > N > ATOM 6439 CA ASN I 795 196.094 301.970 252.599 1.00 91.20 > C > ATOM 6440 C ASN I 795 195.641 301.634 254.015 1.00 91.20 > C > ATOM 6441 O ASN I 795 195.666 302.490 254.898 1.00 91.20 > O > ATOM 6442 CB ASN I 795 195.497 300.970 251.599 1.00 91.20 > C > ATOM 6443 CG ASN I 795 196.000 301.190 250.183 1.00 91.20 > C > ATOM 6444 ND2 ASN I 795 195.297 302.023 249.427 1.00 91.20 > N > ATOM 6445 OD1 ASN I 795 197.011 300.617 249.776 1.00 91.20 > O > ATOM 6446 OXT ASN I 795 195.241 300.505 254.300 1.00 91.20 > O > END > > -------------------------------------------------- > Dr. Clemens Grimm > Institut für Biochemie > Biozentrum der Universität Würzburg > Am Hubland > D-97074 Würzburg > Germany > e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de > phone : +49 0931 31 84031 > ------------------------------------------------- > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
