Well - I use standard software.Use GESANT or some such program to fit Structure 2 A to Structure ! A only - output wilh have all A B C but only A has been fitted//Now fit Structure 2 B from fitted structure to Structur 1 B .It will give you a PHI CHI Kappa needed to rotate B2 to B1Is that clear enough - I can send an example..EleanorOn Wed, 8 Jul 2020 at 18:09, kazi nasrin sultana <kazinasrin1@gmail.com> wrote:Hi,You can try elNemo server.Regards,NasrinPhD scholarOn Wed, Jul 8, 2020, 10:16 PM Antony Oliver <Antony.Oliver@sussex.ac.uk> wrote:Dear CCP4bb
Is anyone kindly able to point me at a server or recommend software that might help me analyse relative domain movements – by comparison of two structures?
Structure 1 has molecules A and B.
Structure 2 has molecules A, B and C.
I am interested in the induced movements, and a description thereof, that the presence of molecule C produces in molecules A and B.
I am aware of DynDom – but I can’t seem to make it produce a readily interpretable output (undoubtedly my fault).
Many thanks for your help in advance.
Antony.
Antony W Oliver FHEA, PhD
Faculty Senior Research FellowGenome Damage and Stability Centre
Science Park Road
University of Sussex
Falmer, Brighton, BN1 9RQ
(office): +44 (0)1273 678349
(lab): +44 (0)1273 677512
antony.oliver@sussex.ac.uk
https://www.sussex.ac.uk/lifesci/oliverlab
https://tinyurl.com/aw-oliver
https://orcid.org/0000-0002-2912-8273
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