You can download such proteins/sequences from the CASP website: https://predictioncenter.org/
At the JCSG, we participated for many years in the annual CASP competition, where we would use/hold our novel experimental crystal structures (before PDB deposition, almost all our ~1500 targets/PDB depositions had < 20% sequence identity to existing PDB entries, from novel Pfam/CATH) as tests by protein structure prediction/modeling groups around the world participating in CASP to try to predict before PDB release, thereby allowing a direct comparison with the prediction algorithm and the experimental structure. Best, Debanu -- Debanu Das On Mon, Jun 7, 2021 at 1:11 PM Scott Horowitz <scott.horow...@du.edu> wrote: > For testing purposes, we want to solve structures of proteins that are not > in the PDB and have no significant sequence homologues in the PDB (i.e. a > blast of the pdb will get no significant hits). Does anyone happen know a > good way to find such proteins efficiently? Having an interesting function > isn't needed. > > Thanks, > Scott > > Scott Horowitz, Ph.D. > > Assistant Professor > > Department of Chemistry & Biochemistry > > Knoebel Institute for Healthy Aging > > University of Denver > > > > ECS Building > > 2155 E. Wesley Ave > > Denver, CO 80208 > > Phone: 303-871-4326 > > Fax: 303-871-7915 > > Zoom Room: https://udenver.zoom.us/my/scotthorowitz > > Email: scott.horow...@du.edu > > Office: Room 561 Lab: Room 505 > > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
