A lesser known service with very powerful search across domains and chains is
TopSearch by Manfred Sippl & Cie.: https://topsearch.services.came.sbg.ac.at/ Its training set includes PDB entries up to 2018. Best, BR From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> On Behalf Of Sam Tang Sent: Thursday, August 5, 2021 23:43 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] off-topic: structural motif / domain comparison Dear all Sorry for an off-topic question here. I wonder if anyone may be aware of any search program which allows one to 'blast' a protein domain just like we 'blast' a protein sequence? For example I have an epitope in hand and would like to find out whether this also exists in other proteins. Most programs I accessed are based on sequence similarity but is there any program which searches a structure against a database of structures? BRs Sam _____ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB <https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1> &A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
