So does PISA with great detailed info on interface residues available. VO
From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> On Behalf Of Jan Dohnalek Sent: Tuesday, May 31, 2022 2:48 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] displaying residues (as a surface perhaps) for one component of a p-p-i Dear Fred, CCP4MG has this capability of automated interface display. When opening a structure you can select from many predefined styles of display. My favourite is Interfaces, then "residues", the surface can be displayed when you ask for PISA analysis within CCP4MG and then select a particular interface and display it. I hope it works for you, Jan On Tue, May 31, 2022 at 8:12 AM Fred Vellieux <frederic.velli...@lf1.cuni.cz<mailto:frederic.velli...@lf1.cuni.cz>> wrote: Dear bb members, I am quite certain that someone must have needed to do this already. I looked at publications but no details were given concerning how figures were prepared. So here is the problem: Given a protein protein interface (with the 3D structure of the complex available) I am looking for a method allowing me to identify and display the interface forming residues of one of the protein components. Plus a surface representation of that part, for the 3D structure. Thanks in advance for any tips. Regards, Fred. Vellieux -- MedChem, 1st F. Medicine, Charles University BIOCEV, Vestec, Czech Republic ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1<https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1> This message was issued to members of www.jiscmail.ac.uk/CCP4BB<http://www.jiscmail.ac.uk/CCP4BB>, a mailing list hosted by www.jiscmail.ac.uk<http://www.jiscmail.ac.uk>, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/<https://www.jiscmail.ac.uk/policyandsecurity/> -- Jan Dohnalek, Ph.D Institute of Biotechnology Academy of Sciences of the Czech Republic Biocev Prumyslova 595 252 50 Vestec near Prague Czech Republic Tel. +420 325 873 758 ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1<https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1> ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
