Dear Elke,

That seems to have done the trick. Can't thank you enough!!! I'm so happy.

For future readers:
ca6 alt loc A and residue 401 70% occ
pa3 #1 alt loc B and residue 402 30% occ
pa3 #2 alt loc C and residue 403 30% occ

I could have probably done pa3 #1 and #2 as the same residue 402 as I was able 
to manipulate both in COOT but I was getting a warning with phenix.refine that 
it couldn't generate restraints for one of them so put C as 403 and that's 
worked :)

Thanks to everyone else that chipped in. It's odd that this is different from 
the way alternate protein residues are handled but there you go. Great way to 
end the week!

Kind regards,
Stuart

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