Very helpful, thank you so much! Medhanjali
On Fri, Mar 3, 2023, 10:48 AM Nicholas Clark <ndcla...@buffalo.edu> wrote: > Hi Medhanjali, > > In Coot, there are two additional options for "automated" correction of > Ramachandran outliers. You can find them under "Calculate". > > For the entire structure in the "Calculate->all molecule" tab, select > Refine/Improve Ramachandran Plot. For a specific region, you can use the > "Calculate->fit loop->fit loop by rama search". These will attempt to fit > to the Ramachandran plot but may still revert during subsequent refinement. > Hope this helps. > > Best, > > Nick Clark > > On Fri, Mar 3, 2023 at 11:24 AM Medhanjali DasGupta < > medhanjalidasgu...@gmail.com> wrote: > >> Hello all! >> >> Is there an easy way to fix the backbone angles in a protein structure to >> fix the Ramachandran outliers in said structure? >> >> Coot has the "Edit backbone torsions" option but wondering if there's any >> other tools available in coot or elsewhere? >> >> Thanks >> Medhanjali Dasgupta >> >> ------------------------------ >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 >> <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jiscmail.ac.uk%2Fcgi-bin%2FWA-JISC.exe%3FSUBED1%3DCCP4BB%26A%3D1&data=05%7C01%7Cndclark2%40g-mail.buffalo.edu%7C0c5dd5d3f0a54e2f586708db1c03c1f0%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638134574691699402%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=%2F7YAE6U9TmISVU0wejfzs0au9jHB56b8WNRQQxvjP%2BQ%3D&reserved=0> >> > > > -- > Nicholas D. Clark (He/Him) > PhD Candidate > Malkowski Lab > University at Buffalo > Department of Structural Biology > Jacob's School of Medicine & Biomedical Sciences > 955 Main Street, RM 5130 > Buffalo, NY 14203 > > Cell: 716-830-1908 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
