On 08/08/2023 09:57, Schaefer, Martina wrote: > > Hello, > > > > I have a problem running pandda.inspect after successful running > pandda.analyse with the newest ccp4 version of pandda. > > > > What do we have: > > * We use Ubuntu as our Linux system > * We installed CCP4-8.0.012 > * When I start pandda.inspect COOT 0.9.8.8.EL opens and the > following error message appears in the terminal window: > > > > INFO:: There are 1 command line scripts to run > > > /opt/remote/ccp4-8.0.012/bin/../lib/python3.7/site-packages/pandda/inspect/__init__.py > > calling run_script() for file > /opt/remote/ccp4-8.0.012/bin/../lib/python3.7/site-packages/pandda/inspect/__init__.py > > debug:: run_script() on > /opt/remote/ccp4-8.0.012/bin/../lib/python3.7/site-packages/pandda/inspect/__init__.py > > Running python script > /opt/remote/ccp4-8.0.012/bin/../lib/python3.7/site-packages/pandda/inspect/__init__.py > > /opt/remote/ccp4-8.0.012/bin/../lib/python3.7/site-packages/pandda/inspect/../resources > > No module named matplotlib > > Traceback (most recent call last): > > File "<string>", line 1, in <module> > > File > "/opt/remote/ccp4-8.0.012/bin/../lib/python3.7/site-packages/pandda/inspect/__init__.py", > line 1725, in <module> > > import matplotlib as mpl > > *ImportError: No module named matplotlib* > > (use-graphics-interface-state) > > > > I checked and we do have a matplotlib python module installed (version > 3.3.4) > > > > Has anybody an idea how to tell COOT that the correct matplotlib > module is present…. > > >
I don't really understand what CCP4 do when packaging Coot. I can say that I don't like the look of the above though. Coot 0.9.x uses python 2 (only). Your above error message mentions python3.7 - so that seems muddled. It might be that you have a python in the same directory as the coot executable, so you can (I guess) use that to install matplotllib: $ which coot /opt/remote/coot-0.9/bin/coot so then: $ /opt/remote/coot-0.9/bin/python -m pip install matplotlib I suspect that that's not much help. Paul. ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
