I tried both and none of them is the same as reported by refmac5.

Qixu Cai
Email: caiq...@gmail.com



James Holton <jmhol...@lbl.gov> 于2023年11月6日周一 01:11写道:

> Are you averaging over all ATOM records?  Or are you including HETATM as
> well?
>
> On 11/5/2023 5:45 AM, Qixu Cai wrote:
>
> Dear all,
>
> I found that the "Mean B value (OVERALL, A**2)" reported by refmac5 in the
> head region of pdb file is 62.76. However, I calculated the average B value
> of all B factors from all atoms and the result is 67.7. What makes the
> difference? The canonical restrained refinement mode was used in refmac5.
> When we prepare the Table 1 of manuscript, which one is correct for the
> "average B value"?
>
> Thanks and best regards,
> Qixu Cai
> Email: caiq...@gmail.com
>
>
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