Hi, Probably you are not setting the grid right. Try the AMDock tool, it uses Autodock vina. Here you can specify your residues, and the grid will be prepared accordingly.
https://github.com/Valdes-Tresanco-MS/AMDock-win Thanks & Regards, -------------------------- *Subhomoi Borkotoky, Ph. D.* Assistant Professor Department of Biotechnology, Invertis University, Bareilly-243123, UP, India. Alternate E-mail: subhomo...@invertisuniversity.ac.in https://scholar.google.co.in/citations?hl=en&pli=1&user=bJz7GokAAAAJ Web of Science Researcher ID: AAC-9193-2021 <https://publons.com/researcher/AAC-9193-2021/> On Sun, Nov 19, 2023 at 6:05 PM Thripthi Shenoy <thripthishe...@gmail.com> wrote: > Greetings to all, > > I have performed docking through Glide and Autodock vina for a protein > for which the active site has been taken from the literature. Glide is able > to dock the compounds correctly in the active site whereas autodock vina > does not dock the compounds within the specified site. I have tried docking > several times in Autodock vina, but not able to obtain proper results. > I would be grateful to receive any suggestions regarding the same. > > Thanking you in advance, > Thripthi S. > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
