I second Eleanor's suggestions. In fact I would hope the PDB made re-depisitions known to the original authors. I had an incident recently where someone (I believe possibly a student) had used one of my structures for MR but then did the deposition as a re-refinement (because they used it as MR for their structure and were confused). Structure was not published so no reviewers saw it but still had a flag of being re-refined on my structure for quite a while before I noticed it unfortunately....
On Sat, 27 Jan 2024, 07:01 Eleanor Dodson, < 0000176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk> wrote: > Did you make the original deposition ? If so the pdb accepts > re-depositions... > > If it was done by someone else I guess the courteous thing is to notify > them and maybe talk to the pdb- redo team? > Cheers Eleanor > > On Sat, 27 Jan 2024 at 01:53, Lucas Souza <lucas.santoso...@outlook.com> > wrote: > >> Dear all, >> >> After auditing and reprocessing a deposited structure with clear >> processing mistakes (missing/wrong residues and ligands with evident >> density) prior to some analysis that are going to be published, what should >> be done? Re-deposit the structure with a "reprocess" flag? Reopen the PDB >> deposition and update the files? Or simply state in the publication that >> the data was reprocessed? >> >> I'm curious if there's a consensus on handling situations of this nature. >> >> Cheers, >> Lucas >> ######################################################################## >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 >> >> This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a >> mailing list hosted by www.jiscmail.ac.uk, terms & conditions are >> available at https://www.jiscmail.ac.uk/policyandsecurity/ >> > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
