Hi all, I would very much like to make use of i2run's capacity for scripting, rather than pressing the same sequence of GUI buttons a few dozen times, but I'm having trouble actually calling it.
The documentation <https://ccp4i2.gitlab.io/rstdocs/i2run/i2run.html> I found gives example code snippets structured as "i2run [function] [options]", but even immediately after sourcing ccp4, entering e.g. "i2run import_merged --help" returns an error saying "bash: i2run: command not found". I found only one reference to i2run on the ccp4bb archive <https://www.mail-archive.com/ccp4bb@jiscmail.ac.uk/msg56079.html> (actually from just 2 days ago!), which included a script that called i2run using the full path of "/ccp4-8.0/lib/python3.7/site-packages/ccp4i2/bin/i2run crank2". However, I was not able to find any equivalent path in either of the 2 ccp4 installations I have access to. Ideally I'd like to use our lab's installation of ccp4 on our university computational cluster, which is currently ccp4-7.1. Attempting to follow the analogous path took me to "ccp4-7.1/lib/python2.7/site-packages", which did not contain a ccp4i2 directory. I'm wondering if perhaps i2run wasn't introduced until ccp4-8.0, and we would need an updated installation? Except, I also have ccp4 downloaded on my laptop (a Mac, if that's relevant), and going to "ccp4-8.0/lib/python3.7/site-packages" there still did not produce a ccp4i2 directory. Therefore, I'm wondering: Does ccp4-7.1 contain i2run, or would I need to update to 8.0 no matter what? And, almost regardless of the answer to that first question: What is the proper way to call i2run/where does it live within a ccp4 installation? I've been searching through the online documentation, but all the information I could find seemed to assume that i2run was readily accessible given the existence of a ccp4 installation, so I'm a bit stumped. Many thanks, Maggie ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
