Your pictures 1 3 & 4 don't seem to show multiple occupancy? Maybe the
difference map 2 is saying - too much complexity ??
Eleanor

On Thu, 30 May 2024 at 23:29, Michael Colaneri <colane...@oldwestbury.edu>
wrote:

> Dear All,
> We have alternate conformations for a number of residues in a structure
> and one is a Val that I show in the attachment.  It was refined with group
> occupancy and the temp factors are fine.  It was also present in an early
> map from autobuild at a time it was not in the model.
>
> The question I have is why the difference map looks this way.  Is it
> inadequate temp factor/occupancy model, high thermal motion, bulk solvent
> in the region, disorder of some sort? I would appreciate any help.
>
> Thank you.
>
>
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