Hi Harry, A BSc student in our lab just had a look at this. Here is the list of mappings pdb-redo uses: https://github.com/PDB-REDO/pdb-redo-main/blob/trunk/tools/pdb-redo-data.cif<https://github.com/PDB-REDO/pdb-redo-main/blob/trunk/tools/pdb-redo-data.cif> (second to last loop).
Cheers, Robbie [https://opengraph.githubassets.com/6fea661601fca9b8e8dbf2d994bd6f4fca81a6e4317848845d8ccb0349f0f171/PDB-REDO/pdb-redo-main]<https://github.com/PDB-REDO/pdb-redo-main/blob/trunk/tools/pdb-redo-data.cif> pdb-redo-main/tools/pdb-redo-data.cif at trunk · PDB-REDO/pdb-redo-main<https://github.com/PDB-REDO/pdb-redo-main/blob/trunk/tools/pdb-redo-data.cif> core pdb-redo script, tools and data files. Contribute to PDB-REDO/pdb-redo-main development by creating an account on GitHub. github.com ________________________________ From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of Harry Powell <0000193323b1e616-dmarc-requ...@jiscmail.ac.uk> Sent: Monday, June 24, 2024 2:03 PM To: CCP4BB@JISCMAIL.AC.UK <CCP4BB@JISCMAIL.AC.UK> Subject: [ccp4bb] List of 3-letter codes of modified amino acids Hi An internet search doesn’t yield an obvious list of these (I did find a paper DOI:10.1016/j.jmgm.2006.08.004 that says there are 293, but the link included appears to be dead - http://deposit.pdb.org/hetdictionary.txt). I’m almost convinced that this has been asked here previously (if not recently), but a quick search through ccp4bb postings has not revealed it to me. Can anyone help? Harry ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB<http://www.jiscmail.ac.uk/CCP4BB>, a mailing list hosted by www.jiscmail.ac.uk<http://www.jiscmail.ac.uk>, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/ ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
