Hi Tommi, From my experience , pymol script might be one of the best options if not the best. Since you might want to consider the relative/normalized b factor for “bridging water” & want to visualize the distances & assess whether all makes sense; pymol script works great for all of those. Unfortunately, not a ready made software but you get tons of ways to customize your script & visualization with the help of command line & pymolwiki.
Best, Reza Karim Sent from my iPhone > On Nov 6, 2024, at 7:43 AM, Kajander, Tommi A <[email protected]> > wrote: > > > Dear all, > > Is there a something available to automatically analyse/identifiy/quantify > bound (“bridging”) water molecules at protein-protein interfaces? Could not > find anyting right away. > > Thanks in advance, > Best, > > Tommi > > > > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
