Oh, dear, that's disappointing. I will get back to you shortly. On Tue, 19 Nov 2024 at 12:58, Otsile Mojanaga <[email protected]> wrote: > > Dear Stuart > That's okay, thank you for all your assistance so far. > I tried the fix and it worked, but for some reason the backup file is only > importing 1 or no jobs for each project, although each project has more than > 8 projects and some have 40 jobs. Is there any way to address this? > > Kind regards, > Otsile > > -----Original Message----- > From: Stuart McNicholas <[email protected]> > Sent: 19 November 2024 08:28 > To: Otsile Mojanaga <[email protected]> > Subject: Re: [ccp4bb] CCp4i2 not starting up > > CAUTION: This email came from outside of the University. To keep your > account safe, only click on links and open attachments if you know the person > who sent the email, or you expected to receive this communication. > > > > Right. Sorry. This all bad, I will fix for next release. However, you should > be able to get further by typing this in the CCP4 console and repeating the > above: > > set CCP4I2=%CCP4%\Python39\Lib\site-packages\ccp4i2 > > On Mon, 18 Nov 2024 at 15:34, Otsile Mojanaga <[email protected]> wrote: > > > > Dear Stuart > > Thanks for the clarification. I opened the CCP4 console and ran the > > command, but I am getting an error instead (screenshot attached) and the > > file is not being made. Also, I was on CCP4-version 8 when CCP4i2 > > experienced the issue then I updated to version 9. I am not sure if this > > might be related to why it is not working? > > > > Kind regards, > > Otsile > > > > -----Original Message----- > > From: Stuart McNicholas <[email protected]> > > Sent: 18 November 2024 13:45 > > To: Otsile Mojanaga <[email protected]> > > Subject: Re: [ccp4bb] CCp4i2 not starting up > > > > [You don't often get email from [email protected]. Learn > > why this is important at https://aka.ms/LearnAboutSenderIdentification > > ] > > > > CAUTION: This email came from outside of the University. To keep your > > account safe, only click on links and open attachments if you know the > > person who sent the email, or you expected to receive this communication. > > > > > > > > Sorry, your first picture shows "ccp4-python" not found. This was my > > mistake. A normal command prompt will not work - you need to start the > > "CCP4 Console" (which should be in the CCP4 section of start menu, or be > > found with "Type here to search" and then ccp4-python should be defined. > > > > Then type: > > > > ccp4-python > > %CCP4%\Python39\Lib\site-packages\ccp4i2\utils\reconstructBrowser.py > > > > > > You should then hopefully see something like the attached picture. > > > > Best wishes, > > Stuart > > > > > > On Mon, 18 Nov 2024 at 13:01, Otsile Mojanaga <[email protected]> wrote: > > > > > > Dear Stuart > > > Thank you for the response. I tried the fix but it did not work as I may > > > have deleted the appropriate backups. I still have the project files > > > intact as such I need to Reconstruct GUI (Method 5). I tried running this > > > based on the instructions in the link (website) you provided but I am > > > unable to get it to work in the command prompt. > > > Please let know how to run the appropriate command so I can generate this > > > 'ccp4i2_backup_db.sqlite ' file, then move it to the appropriate folder. > > > > > > Kind regards, > > > Otsile > > > > > > > > > -----Original Message----- > > > From: Stuart McNicholas <[email protected]> > > > Sent: 18 November 2024 09:10 > > > To: Otsile Mojanaga <[email protected]> > > > Cc: [email protected] > > > Subject: Re: [ccp4bb] CCp4i2 not starting up > > > > > > [You don't often get email from [email protected]. Learn > > > why this is important at > > > https://aka.ms/LearnAboutSenderIdentification > > > ] > > > > > > CAUTION: This email came from outside of the University. To keep your > > > account safe, only click on links and open attachments if you know the > > > person who sent the email, or you expected to receive this communication. > > > > > > > > > > > > Dear Otsile > > > > > > The first thing I would suggest is removing the file > > > C:\Users\otsil\CCP4I2\projectList-backup.xml and then trying to run > > > again. > > > > > > If that does not work then you can try the database recovery methods in: > > > > > > https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fht > > > ml%2F&data=05%7C02%7Coom21%40bath.ac.uk%7C47444dfffc2e45157f4d08dd08 > > > 74127d%7C377e3d224ea1422db0ad8fcc89406b9e%7C0%7C0%7C6386760168161628 > > > 97%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwM > > > CIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sda > > > ta=2EbpjgG3NVRfD9VaUj9db88E2YkeHcF9541p%2B5pl3KU%3D&reserved=0 > > > -preview.github.io%2F%3Furl%3Dhttps%3A%2F%2Fgithub.com%2Fccp4%2Fccp4 > > > i2 > > > %2Fblob%2Fmain%2Fdocs%2FCCP4i2_DB_Recovery.html&data=05%7C02%7Coom21 > > > %4 > > > 0bath.ac.uk%7Cbcbeef40ae154a8e25bd08dd07d7275f%7C377e3d224ea1422db0a > > > d8 > > > fcc89406b9e%7C0%7C0%7C638675342887849392%7CUnknown%7CTWFpbGZsb3d8eyJ > > > Fb > > > XB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpb > > > CI > > > sIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=uWkeKVDjFP23Mvo2Lm1Iby6l6Ipn7xR > > > Mk > > > W0WPLLANcE%3D&reserved=0 > > > > > > I would actually suggest trying Method *4* first. This tries to use a > > > backup copy of your database which ought to be OK. The instructions there > > > are a bit Linux/Mac oriented, so you actually want to: > > > > > > 1) Start a command prompt > > > 2) cd \Users\otsil\CCP4I2\db > > > 3) dir (This will list > > > hopefully lots of database backups) > > > 4) del database.sqlite database.sqlite-shm database.sqlite-wal > > > 5) copy database_sqlite_backup-17102018-161520 database.sqlite <-- > > > THIS IS AN EXAMPLE FILENAME. You actually want probably the most recent > > > of the backup files. > > > > > > If this does not work, thy the other methods. And please get back in > > > touch with us if you cannot fix it. > > > > > > Best wishes, > > > Stuart McNicholas > > > > > > On Sat, 16 Nov 2024 at 16:46, Otsile Mojanaga > > > <[email protected]> wrote: > > > > > > > > Dear all > > > > > > > > I updated my windows 11 PC with a windows update but since then, I am > > > > unable to open ccp4i2. When I do so I get an error about 'database disk > > > > image is malformed' (image attached). Are there suggests on how I can > > > > get cc4i2 to work again? > > > > > > > > > > > > > > > > Kind regards, > > > > > > > > Otsile > > > > > > > > > > > > > > > > > > > > ________________________________ > > > > > > > > To unsubscribe from the CCP4BB list, click the following link: > > > > https://www/. > > > > jiscmail.ac.uk%2Fcgi-bin%2FWA-JISC.exe%3FSUBED1%3DCCP4BB%26A%3D1&d > > > > at > > > > a= > > > > 05%7C02%7Coom21%40bath.ac.uk%7C5071736ef5894e8c2b6a08dd07b0db1b%7C > > > > 37 > > > > 7e > > > > 3d224ea1422db0ad8fcc89406b9e%7C0%7C0%7C638675179250457769%7CUnknow > > > > n% > > > > 7C > > > > TWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW > > > > 4z > > > > Mi > > > > IsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=Ux8kHThmRak2 > > > > %2 > > > > BK > > > > s%2BSC52rsf5sV%2B0Acy%2BsjtVbr1yiOY%3D&reserved=0
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