Hi Natesh;
I don't know that "density" is necessarily inappropriate: the map gives
potential for each voxel, so potential per volume. I'd think that's a
density.
Unsure about "cryoEM density" though, but this may be a matter of how
the phrase is delineated. I often look at green (and red) density maps
in Coot, but that's probably not a representation of "green density".
// Apologies for going off-topic; Johan
On 2024-11-27 11:16, Natesh Ramanathan wrote:
Dear Gloria,
Already the wonderful chimera, phenix and ccpEM and other
excellent softwares have been highlighted for your requirements.
Along with that, I would like to suggest a small correction. It is not
correct to say 'cryoEM density' or 'cryoEM density map'. X-ray
Crystallography gives 'electron density map' and cryoEM gives 'electron
potential map' (Also known as electrostatic potential maps or Coulomb
potential maps).
Best regards,
Natesh
On Wed, 27 Nov 2024 at 05:20, Gloria Borgstahl <[email protected]
<mailto:[email protected]>> wrote:
Hello Friends,
We are finally using cryoEM when the crystallography got too hard!
We have a crystal structure for the hexamer. What is the easiest
software tool to swing a monomer or hexamer into the cryoEM density?
Thank you, Gloria
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Dr. Ramanathan Natesh
Associate Professor,
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Founding and Current President of Cryo Electron Microscopy and 3
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Indian Institute of Science Education and Research Thiruvananthapuram
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