Hi everyone,
I am struggling to think about a fast way to move a loop away from a protein
domain. I have an alphafold model of a multidomain transmembrane protein that,
for a presentation, I would like to "adjust". Between the intracellular bit of
it and the extracellular part there is a intrinsically disordered loop. I would
like to "open" this loop to emphasize that the domains are distant from each
other. And I can not think about any other way of doing it if not changing
manually the phi and psi angles of every single amino acid in this loop, which
I do not want to do. Any suggestion?
Best wishes
______________________________________________________
Rafael Marques da Silva
PhD Student – Structural Biology
University of Leicester
Mestre em Física Biomolecular
Universidade de São Paulo
Bacharel em Ciências Biológicas
Universidade Federal de São Carlos
phone: +44 07861 273773
"A sorte acompanha uma mente bem treinada"
________________________________________________
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