The FoXS server calculates Rg. Upload a pdb file (or enter pdb ID in the box) without a SAXS curve and it will report Rg and show a plot of the SAXS curve calculated from the structure.
https://modbase.compbio.ucsf.edu/foxs/ ----------------------- John J. Tanner Professor of Biochemistry and Chemistry Department of Biochemistry University of Missouri 117 Schweitzer Hall 503 S College Avenue Columbia, MO 65211 Phone: 573-884-1280 Email: [email protected]<mailto:[email protected]> https://cafnrfaculty.missouri.edu/tannerlab/ Lab: Schlundt Annex rooms 3,6,9, 203B, 203C Office: Schlundt Annex 203A From: CCP4 bulletin board <[email protected]> on behalf of Tjaard Pijning <[email protected]> Date: Thursday, June 5, 2025 at 6:59 AM To: [email protected] <[email protected]> Subject: Re: [ccp4bb] Rg calculation for a protein structure.pdb WARNING: This message has originated from an External Source. This may be a phishing expedition that can result in unauthorized access to our IT System. Please use proper judgment and caution when opening attachments, clicking links, or responding to this email. Hi Faisal, CRYSOL, part of the ATSAS package, will do this for you. See https://www.embl-hamburg.de/biosaxs/crysol.html Good luck, Tjaard Dr. Ing. Tjaard Pijning Biomolecular X-ray Crystallography Faculty of Science and Engineering University of Groningen Nijenborgh 7, 9747 AG Groningen The Netherlands Office 5171.00.70 (Mo-Thu) Tel +31 6 3192 1948 From: CCP4 bulletin board <[email protected]> On Behalf Of khaja faisal tarique Sent: donderdag 5 juni 2025 13:43 To: [email protected] Subject: [ccp4bb] Rg calculation for a protein structure.pdb Hello everyone Is there any tool or a server available to calculate radius of gyration of a protein structure in the pdb format ? I want to use Rg as a metric to do structural comparisons of homologous proteins. Best regards Faisal ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
