On Thursday 23 November 2006 15:34, [EMAIL PROTECTED] wrote:
> i would Know where i can find the RTool class because I didn't find
> anything about it.

Try the JavaDoc: 
http://cheminfo.informatics.indiana.edu/~rguha/code/java/nightly/api/

> I must do a structural match of two direct graphs
> but not referring to chemical applications.

There should be no problem in wrapping anything as an atom. Use the 
getOverlaps() method in [1].

> My work is about ontology mapping.Please help me !!!!!!!!!!

I hope this helps.

Egon

ps. please use the user list for this thread.

1.http://cheminfo.informatics.indiana.edu/~rguha/code/java/nightly/api/org/openscience/cdk/isomorphism/UniversalIsomorphismTester.html

-- 
[EMAIL PROTECTED]
Cologne University Bioinformatics Center (CUBIC)
Blog: http://chem-bla-ics.blogspot.com/
GPG: 1024D/D6336BA6

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