Egon Willighagen <[EMAIL PROTECTED]> wrote:

> On Monday 29 January 2007, Nina Jeliazkova wrote:
> > Some solutions to be discussed:
> > - introduce something like "translator facility" to perform translation
> > property_name_in_file -> property_name_to_use_in_this_software
> >
> > - separate properties into different Hashmaps  - like identifiers (cas,
> > names), descriptors, measured properties, etc.
> >
> > Does something like this already exist in CDK?
> 
> CML has a good approach in this: use dictionaries. These dictionaries
describe
> 
> what a certain 'label' means. For example, it could define
> "CAS RC" to be equivalent to "CAS" etc. OWL is very much suited for this.
> 
> Remains, however, that these dictionaries need to be written, which really
is
> the responsibility of the program (author) who write the file that uses that
> dictionary...
> 
> OWL also allows classification of entries, e.g. done in the blue obelisk 
> algorithm dictionary (see the BO article in JCIM). Based on such 
> classification, we could set up a tool to split up properties according to 
> such a classification.
> 

Thanks, will have a look.

> Now, MDL molfile is not really the suitable format for this, and suggest the

> use of CML instead. Nevertheless, we could do something similar for MDL 
> molfiles too, though this would be an undocumented convention. CML at least 
> allows specificing that.


Well, while I aggree CML is better, I am not sure users will be happy to
change habits (and existing MDL files). 

I might not be clear, but my thoughts were more about structures in memory,
rather than how info is stored in files.

Best regards,
Nina

> 
> Egon





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