Hi, I happens for example when you serialize a Double.NaN. I suggest you try serializing to CML and see if the problem persist.
/Ola On 30 okt 2008, at 12.06, Markus Hartenfeller wrote: > Hi all, > > I have a problem with 2D coordinates in SDF files written out by the > MDLWriter. 2D coordinates are calculated by the > StructureDiagramGenerator class. > > Sometimes the sign "�" instead of a figure is written out as a > coordinate. In case it happens always both coordinates are concerned > at > once (see attached example sdf entry at the end of this mail). > > Has anyone ever experienced this problem and knows why it happens and > how to fix it? > I could not find a bug report dealing with this problem. > > Best regards and thanks for your support. > > Markus > > > > > CDK 10/28/08,17:56 > > 42 46 0 0 0 0 0 0 0 0999 V2000 > 0.5130 -1.4095 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 0.0000 1.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 1.4772 1.2395 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 2.9544 0.9791 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 > 0.5130 2.9095 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 1.0261 4.3191 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 > -1.2990 2.2500 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > -2.5981 1.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > -3.8971 2.2500 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > -5.1962 1.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > -6.4952 2.2500 0.0000 S 0 0 0 0 0 0 0 0 0 0 0 0 > � � 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 > -3.8971 -0.7500 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > -5.1962 -0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > � � 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > -2.5981 -0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 1.8471 -0.3711 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 > 1.8471 1.8711 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 2.6182 3.1577 0.0000 S 0 0 0 0 0 0 0 0 0 0 0 0 > 1.4772 0.2605 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 2.5562 -0.7815 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 3.8806 -0.0773 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 3.6202 1.3999 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 2.1348 1.6087 0.0000 S 0 0 0 0 0 0 0 0 0 0 0 0 > -1.2990 -0.7500 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 1.9902 -1.6700 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > -0.9642 -1.6700 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > 0.5130 -2.9095 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > -1.2990 -2.2500 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > -1.2990 3.7500 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > 2.3475 -2.2669 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > -2.5981 -1.5000 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > -2.5981 3.0000 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > 2.3420 -1.7871 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > 5.2288 -0.7349 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > 4.6622 2.4789 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > -3.8971 -2.2500 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > -3.8971 3.7500 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > -6.4952 -0.7500 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > � � 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > � � 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 > 1 2 1 0 0 0 0 > 2 3 1 0 0 0 0 > 2 21 1 0 0 0 0 > 2 26 1 0 0 0 0 > 3 4 1 0 0 0 0 > 3 6 1 0 0 0 0 > 3 8 1 0 0 0 0 > 4 5 3 0 0 0 0 > 6 7 3 0 0 0 0 > 8 9 1 0 0 0 0 > 8 18 1 0 0 0 0 > 9 10 1 0 0 0 0 > 9 17 1 0 0 0 0 > 10 11 1 0 0 0 0 > 10 16 1 0 0 0 0 > 11 12 2 0 0 0 0 > 11 13 1 0 0 0 0 > 13 14 1 0 0 0 0 > 14 15 1 0 0 0 0 > 14 17 1 0 0 0 0 > 15 16 2 0 0 0 0 > 17 26 1 0 0 0 0 > 18 19 1 0 0 0 0 > 19 20 2 0 0 0 0 > 19 26 1 0 0 0 0 > 21 22 2 0 0 0 0 > 21 25 1 0 0 0 0 > 22 23 1 0 0 0 0 > 23 24 2 0 0 0 0 > 24 25 1 0 0 0 0 > 1 27 1 0 0 0 0 > 1 28 1 0 0 0 0 > 1 29 1 0 0 0 0 > 26 30 1 0 0 0 0 > 8 31 1 0 0 0 0 > 22 32 1 0 0 0 0 > 17 33 1 0 0 0 0 > 9 34 1 0 0 0 0 > 18 35 1 0 0 0 0 > 23 36 1 0 0 0 0 > 24 37 1 0 0 0 0 > 14 38 1 0 0 0 0 > 10 39 1 0 0 0 0 > 13 40 1 0 0 0 0 > 15 41 1 0 0 0 0 > 16 42 1 0 0 0 0 > M END > $$$$ > > > ------------------------------------------------------------------------- > This SF.Net email is sponsored by the Moblin Your Move Developer's > challenge > Build the coolest Linux based applications with Moblin SDK & win > great prizes > Grand prize is a trip for two to an Open Source event anywhere in > the world > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > _______________________________________________ > Cdk-user mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/cdk-user ------------------------------------------------------------------------- This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ _______________________________________________ Cdk-user mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/cdk-user
