On Mon, Nov 3, 2008 at 3:23 PM, Mark Rijnbeek <[EMAIL PROTECTED]> wrote:
> I attached an example test below. mol1 and mol2 are both Indole and
> therefore sub graphs of each other.
> However if you uncomment the fingerprinter line, the sub graph test
> returns false. So it looks like the ExtendedFingerprinter is actually
> changing mol2.

That would be rather nasty.. :( Which CDK version?

Egon

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http://chem-bla-ics.blogspot.com/

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