The problem appears with IE, Firefox, Chrome, Opera but not with Safari.
2010/7/13 remy d1 <[email protected]>
> Hi,
>
> I have some random problem to load some molecule (mol file) with JCP Viewer
> applet. I see only a totally white object. I have no problem to load it with
> the editor applet and the problem resolves itself when I double-click on the
> applet object (detachable = true). It is very special and it does not
> happen with all the molecules...
>
> Here is my code :
>
>> echo "<!--[if IE]>
>> <object classid=\"clsid:8AD9C840-044E-11D1-B3E9-00805F499D93\"
>>
>> codebase=\"
>> http://java.sun.com/update/1.5.0/jinstall-1_5-windows-i586.cab#Version=1,5,0,0\<http://java.sun.com/update/1.5.0/jinstall-1_5-windows-i586.cab#Version=1,5,0,0%5C>
>> "
>> width=\"500\" height=\"400\"
>> id=\"JCP\">
>> <script>/*<![endif]--><script
>> type=\"text/javascript\">/**/</script>
>> <!--[if !IE]><!-->
>> <object type=\"application/x-java-applet;version=1.5\"
>> width=\"500\" height=\"400\" id=\"JCP\" scrollbars=\"false\"
>> detachable=\"true\">
>> <!--<![endif]-->
>> <param name=\"code\" value=\"org.openscience.jchempaint.applet.
>> JChemPaintViewerApplet\">
>> <param name=\"archive\"
>> value=\"jchempaint/jchempaint-applet-core.jar\">
>> <param name=\"load\" value=\"jmol/mol/".$Molfile."\">
>> </object>";
>>
>
>
>
> Here is a sample of mol file with loading problem :
>
> Test.cdx
>> OpenBabel05051014322D
>>
>> 18 20 0 0 0 0 0 0 0 0999 V2000
>> 25.1182 -26.2472 0.0000 C 0 0 0 0 0
>> 25.1182 -30.1793 0.0000 C 0 0 0 0 0
>> 27.8987 -32.9598 0.0000 C 0 0 0 0 0
>> 31.8308 -32.9598 0.0000 C 0 0 0 0 0
>> 34.6113 -30.1793 0.0000 C 0 0 0 0 0
>> 34.6113 -26.2472 0.0000 C 0 0 0 0 0
>> 31.8308 -23.4667 0.0000 C 0 0 0 0 0
>> 27.8987 -23.4667 0.0000 C 0 0 0 0 0
>> 37.3917 -32.9598 0.0000 C 0 0 0 0 0
>> 41.3239 -32.9598 0.0000 C 0 0 0 0 0
>> 44.1044 -30.1793 0.0000 C 0 0 0 0 0
>> 44.1044 -26.2472 0.0000 C 0 0 0 0 0
>> 41.3239 -23.4667 0.0000 C 0 0 0 0 0
>> 37.3917 -23.4667 0.0000 C 0 0 0 0 0
>> 33.7969 -20.0614 0.0000 C 0 0 0 0 0
>> 31.8308 -16.6560 0.0000 C 0 0 0 0 0
>> 27.8987 -16.6560 0.0000 C 0 0 0 0 0
>> 25.9326 -20.0614 0.0000 C 0 0 0 0 0
>> 1 2 1 0 0 0
>> 8 1 1 0 0 0
>> 2 3 1 0 0 0
>> 3 4 1 0 0 0
>> 4 5 1 0 0 0
>> 5 6 1 0 0 0
>> 5 9 1 0 0 0
>> 6 7 1 0 0 0
>> 14 6 1 0 0 0
>> 7 8 1 0 0 0
>> 7 15 1 0 0 0
>> 18 8 1 0 0 0
>> 9 10 1 0 0 0
>> 10 11 1 0 0 0
>> 11 12 1 0 0 0
>> 12 13 1 0 0 0
>> 13 14 1 0 0 0
>> 15 16 1 0 0 0
>> 16 17 1 0 0 0
>> 17 18 1 0 0 0
>> M END
>>
>
>
> As you can see it has been generated with chemdraw and converted with
> openbabel.
>
> Java version : 1 6 0 20. and last release of firefox.
>
> It seems to be a refresh problem, because I have a similar problem with IE,
> but if I scroll down I could see the structure. With some other structures,
> I have to change tab on my browser, or put my mouse over the applet to see
> the molecule...
>
> It is very strange and some help would be appreciated.
>
> Thanks,
>
> Regards.
>
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