Dr. Guha,

 > iload.molecules("157.poly.sdf", type="sdf", aromaticity=FALSE, 
typing=FALSE, isotopes=FALSE)
Error in .jcall("org/openscience/cdk/DefaultChemObjectBuilder", 
"Lorg/openscience/cdk/DefaultChemObjectBuilder;",  :
  method getInstance with signature 
()Lorg/openscience/cdk/DefaultChemObjectBuilder; not found

 > iload.molecules("157.poly.sdf", type='sdf', aromaticity=FALSE, 
typing=FALSE, isotopes=FALSE)
Error in .jcall("org/openscience/cdk/DefaultChemObjectBuilder", 
"Lorg/openscience/cdk/DefaultChemObjectBuilder;",  :
  method getInstance with signature 
()Lorg/openscience/cdk/DefaultChemObjectBuilder; not found

Maybe the solution here for me is more coffee for me.  :-P

Thanks!
-Mike


Rajarshi Guha wrote:
> On Wed, Sep 29, 2010 at 2:56 PM, Michael Krein <[email protected]> wrote:
>
>   
>> but iload using any/all options still  bombs with,
>>     
>>> iload.molecules("157.poly.sdf", aromaticity=FALSE, typing=FALSE,
>>> isotopes=FALSE)
>>>       
>
> This will work if you also specify the type='sdf' argument.
>
>   


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