That is also correct. You have 2 position-3 aromatic nitrogens that fit
that query. Darn symmetry ;)
Wanted to put in my two cents before any code got changed.
On Oct 1, 2010, at 5:12 AM, Jules Kerssemakers wrote:
> If I understand correctly, the SQT searches for possible matches of a
> query pattern in a target structure.
>> From that point of view two hits make a lot of sense: You have a
> symmetrical cyclic molecule, so you get one hit for the expected
> mapping, and one hit for the mirror-image mapping.
Yes, that's correct.
But my understanding was that atoms in the environment specification
do not get returned in the match. In this case the match is only to
the first 'n' in the query (and not the entire ring)
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