Hi Asad,

I meant the algorithm ported from chemkit:

https://github.com/asad/Benchmark/tree/master/src/chemkit

 > I concur with Nina's view on library vs database search.

I'm not sure how you differentiate library vs database search? To 
explain myself: graph matching is not done natively in a relational 
database so you need somekind of library/add-in/carrtridge anyway?
Where is the advanatge of a database in the graph matching step?

Best Regards,

Joos

Am 09.09.2011 02:37, schrieb Syed Asad Rahman:
> Hi Joos, I concur with Nina's view on library vs database search.
>
> Just wondering if you had used the right code...
>
> https://github.com/asad/SMSD/tree/master/src/org/openscience/smsd/algorithm/vflib/substructure
>
> Kind test it with the above code.
>
> or use 
> https://github.com/asad/SMSD/blob/master/src/org/openscience/smsd/Substructure.java
>
> Asad
>


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