Hey,
I created a xml structured file containing SMARTS strings.
When I try to parse this xml file, SMARTS strings containing the sequence
[#1] are misread by the xml parser, more specifically: the remaining
characters of the string are not read in anymore. This is probably due to an
illegal xml character sequence.
Since [#1] represents a hydrogen atom in SMARTS, I really need this
character sequence.
Since you probably have experience in xml parsing with CDK, do you know a
way to avoid the xml misinterpretation? Or could you maybe point me out to a
CDK xml parser that handles SMARTS strings? Or maybe, there is an
alternative in representing a hydrogen in SMARTS?
Regards,
Nick
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