On Thu, Apr 26, 2012 at 1:39 AM, Jochen Schreiber <[email protected]> wrote:

> And my last question is: Have anyone experience or something else with
> comparing manhatten and tanimoto. Is there a way that i can do that?

One empirical approach is to evaluate pairwise similarities for a set
of molecules and generate a histogram of the similarity values. Doing
this for the two metrics would give you two distributions which you
could fit and then identify the similarity values that give you a
similar proportion of molecules above that cutoff.

-- 
Rajarshi Guha | http://blog.rguha.net
NIH Center for Advancing Translational Science

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